Welcome to Seg2Link

Seg2Link is a program designed to semi-automatically segment cells in 3D image stacks. It takes an inaccurate deep learning cell/non-cell prediction as input and assists users in quickly transforming the prediction into accurate cell segmentation.
To go along with it, we also provide Seg2Link-unet2d, a program for training deep neural networks to predict cellular/non-cellular regions.
This user guide applies to Seg2Link 0.1.2 and Seg2Link-unet2d 0.2.0