Panels description

Panels

Panels 1, 2, 3, 5, 7, and 9

See descriptions of in round 1.

4. Current layer [cursor position] selected label

Together with the Localize function, the information of cursor position here can assist users in locating a cell.

6. States

Four types of information/functions are shown here:

1. The largest cell ID in current segmentation result.
2. The cached states that can be retrieved with undo/redo.
3. Select a cell ID and locate its position. See Localize
4. The contents of the label list, used in Merge and Delete

8. Divide a single cell

• Mode
  • 2D: Divide / Divide-Relink a cell in a specific slice.
  • 3D: Divide a cell in 3D space.
• Max division
  • Only used in 2D mode.
  • The max number of cells allowed in the division result.
  • If more cells are obtained, smaller cells will be merged with nearby cells.
  • Inf means no limitation of the cell number.
• Divide cell
  • Show information of division result.
• Check it
  • Select a cell in the division result and jump to the slice containing its center.

10. Save/Export

• Save segmentation
  • Save: Save the current result as seg-modified.npy.
  • Save as: Save the current result with a custom filename.
• Load segmentation
  • Load the segmentation result saved as npy format.
• Sort labels and remove tiny cells
• Export segmentation as .tiff files